SeqAn
Tutorial
Getting Started
A First Example
Background and Motivation
Sequences
Alphabets
String Sets
Sequences In-Depth
Iterators
Alignment Representation
Pairwise Sequence Alignment
Multiple Sequence Alignment
Indices
Index Iterators
Q-gram Index
Pattern Matching
Graphs
Basic Sequence I/O
Indexed FASTA I/O
Basic SAM and BAM I/O
VCF I/O
BED I/O
GFF and GTF I/O
Modifiers
Randomness
Seed-and-Extend
Parsing Command Line Arguments
Genome Annotations
I/O Overview
Sequence File I/O
SAM and BAM I/O
File I/O
Lexical Casting
Parsing
Fragment Store
Simple RNA-Seq
Simple Read Mapping
Mini Bowtie
Journaled Set
KNIME Nodes
Basic Techniques
Metafunctions
Generic Programming
Global Function Interface
Basics
Writing Tests
How Tos
Accessing Index Fibres
Automating Tests With CTest
Choosing The JRE Version
Computing Positions In Clipped Alignments
Getting Started with CUDA
Setup Your Editor
Efficiently Importing Millions Of Sequences
Filtering Similar Sequences
Fixing Whitespace Automatically
Generating KNIME Nodes for External Tools
Generating SeqAn KNIME Nodes
Installing Contribs On Windows
Profiling Programs
Setup Nightly Builds
Using Parallel Build Directories
Creating Workflows with KNIME
Using The Code Generator
Working With Custom Score Matrices
Writing App Tests
Writing Commit Messages
Writing Nice Unix Programs
Writing Tests
Writing Tutorials
Infrastructure
The CMake-Based Build System
Documentation Infrastructure
SeqAn Repository Structure
Build Manual
Integration with your own Build System
Using the FindSeqAn CMake Module
Using the SeqAn Build System
SeqAn Style Guides
SeqAn C++ Code Style
Dox API Docs
SeqAn JavaScript Style Guide
SeqAn Python Style Guide
Glossary
Suffix Tree
References
SeqAn
Docs
»
Tutorial
»
Global Function Interface
Edit on GitHub
ToC
Contents
Global Function Interface
Global Function Interface
ΒΆ
Example to include STL bitset such that they can be used as a String in SeqAn.
Please enable JavaScript to view the
comments powered by Disqus.
comments powered by
Disqus
Read the Docs
v: seqan-v1.4.2
Versions
seqan-v1.4.2
master
latest
develop
Downloads
PDF
HTML
Epub
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.